STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_3253Purine-cytosine permease fcyB. (569 aa)    
Predicted Functional Partners:
TRAPUB_628
Histone acetyltransferase type B subunit 2.
    
 0.813
TRAPUB_10368
Uncharacterized protein.
    
   0.633
TRAPUB_5361
Uncharacterized protein.
    
 
 0.630
TRAPUB_4618
HMA domain-containing protein.
    
   0.621
TRAPUB_13031
Uncharacterized protein.
   
 
  0.540
TRAPUB_10591
Uncharacterized protein.
   
 
  0.540
TRAPUB_13362
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.534
TRAPUB_5562
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
  0.508
TRAPUB_10067
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
  0.506
TRAPUB_13513
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
  0.504
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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