Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TRAPUB_10067 | TRAPUB_10591 | A0A1M2W0B8 | A0A1M2VZ49 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | Uncharacterized protein. | 0.885 |
TRAPUB_10067 | TRAPUB_13031 | A0A1M2W0B8 | A0A1M2VSG2 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | Uncharacterized protein. | 0.885 |
TRAPUB_10067 | TRAPUB_13362 | A0A1M2W0B8 | A0A1M2W7W1 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
TRAPUB_10067 | TRAPUB_13513 | A0A1M2W0B8 | A0A1M2VQY9 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | DNA-directed RNA polymerases I, II, and III subunit RPABC2. | 0.999 |
TRAPUB_10067 | TRAPUB_3253 | A0A1M2W0B8 | A0A1M2VEE9 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | Purine-cytosine permease fcyB. | 0.506 |
TRAPUB_10067 | TRAPUB_4618 | A0A1M2W0B8 | A0A1M2W7M7 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | HMA domain-containing protein. | 0.665 |
TRAPUB_10067 | TRAPUB_5361 | A0A1M2W0B8 | A0A1M2V8J6 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | Uncharacterized protein. | 0.657 |
TRAPUB_10067 | TRAPUB_5562 | A0A1M2W0B8 | A0A1M2V7Y8 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.980 |
TRAPUB_10067 | TRAPUB_628 | A0A1M2W0B8 | A0A1M2VLH5 | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | Histone acetyltransferase type B subunit 2. | 0.479 |
TRAPUB_10368 | TRAPUB_13362 | A0A1M2VZT1 | A0A1M2W7W1 | Uncharacterized protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.459 |
TRAPUB_10368 | TRAPUB_3253 | A0A1M2VZT1 | A0A1M2VEE9 | Uncharacterized protein. | Purine-cytosine permease fcyB. | 0.633 |
TRAPUB_10368 | TRAPUB_4618 | A0A1M2VZT1 | A0A1M2W7M7 | Uncharacterized protein. | HMA domain-containing protein. | 0.870 |
TRAPUB_10591 | TRAPUB_10067 | A0A1M2VZ49 | A0A1M2W0B8 | Uncharacterized protein. | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | 0.885 |
TRAPUB_10591 | TRAPUB_13362 | A0A1M2VZ49 | A0A1M2W7W1 | Uncharacterized protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.873 |
TRAPUB_10591 | TRAPUB_13513 | A0A1M2VZ49 | A0A1M2VQY9 | Uncharacterized protein. | DNA-directed RNA polymerases I, II, and III subunit RPABC2. | 0.878 |
TRAPUB_10591 | TRAPUB_3253 | A0A1M2VZ49 | A0A1M2VEE9 | Uncharacterized protein. | Purine-cytosine permease fcyB. | 0.540 |
TRAPUB_10591 | TRAPUB_5562 | A0A1M2VZ49 | A0A1M2V7Y8 | Uncharacterized protein. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.886 |
TRAPUB_13031 | TRAPUB_10067 | A0A1M2VSG2 | A0A1M2W0B8 | Uncharacterized protein. | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | 0.885 |
TRAPUB_13031 | TRAPUB_13362 | A0A1M2VSG2 | A0A1M2W7W1 | Uncharacterized protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.873 |
TRAPUB_13031 | TRAPUB_13513 | A0A1M2VSG2 | A0A1M2VQY9 | Uncharacterized protein. | DNA-directed RNA polymerases I, II, and III subunit RPABC2. | 0.878 |
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