Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MED17 | TRAPUB_2991 | A0A1M2V851 | A0A1M2VF55 | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | 0.607 |
TRAPUB_11000 | TRAPUB_11375 | A0A1M2VXS6 | A0A1M2VWY0 | Nitrate reductase [NADH] 1. | Sulfite oxidase. | 0.893 |
TRAPUB_11000 | TRAPUB_2991 | A0A1M2VXS6 | A0A1M2VF55 | Nitrate reductase [NADH] 1. | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | 0.776 |
TRAPUB_11000 | TRAPUB_8495 | A0A1M2VXS6 | A0A1M2W4Y0 | Nitrate reductase [NADH] 1. | Tryptophan synthase. | 0.782 |
TRAPUB_11000 | TRAPUB_8972 | A0A1M2VXS6 | A0A1M2W3Y2 | Nitrate reductase [NADH] 1. | Nitrate reductase [NADH] 1. | 0.965 |
TRAPUB_11375 | TRAPUB_11000 | A0A1M2VWY0 | A0A1M2VXS6 | Sulfite oxidase. | Nitrate reductase [NADH] 1. | 0.893 |
TRAPUB_11375 | TRAPUB_2991 | A0A1M2VWY0 | A0A1M2VF55 | Sulfite oxidase. | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | 0.659 |
TRAPUB_11375 | TRAPUB_8972 | A0A1M2VWY0 | A0A1M2W3Y2 | Sulfite oxidase. | Nitrate reductase [NADH] 1. | 0.893 |
TRAPUB_13616 | TRAPUB_2991 | A0A1M2VQK6 | A0A1M2VF55 | DNA repair protein RAD50. | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | 0.630 |
TRAPUB_13616 | TRAPUB_486 | A0A1M2VQK6 | A0A1M2VM27 | DNA repair protein RAD50. | Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. | 0.999 |
TRAPUB_13616 | TRAPUB_6933 | A0A1M2VQK6 | A0A1M2V4T6 | DNA repair protein RAD50. | ATP-dependent DNA helicase Q-like 1. | 0.989 |
TRAPUB_13616 | TRAPUB_7199 | A0A1M2VQK6 | A0A1M2V410 | DNA repair protein RAD50. | Werner syndrome ATP-dependent helicase. | 0.989 |
TRAPUB_13616 | TRAPUB_7249 | A0A1M2VQK6 | A0A1M2V3Q0 | DNA repair protein RAD50. | BRCT domain-containing protein. | 0.948 |
TRAPUB_2991 | MED17 | A0A1M2VF55 | A0A1M2V851 | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.607 |
TRAPUB_2991 | TRAPUB_11000 | A0A1M2VF55 | A0A1M2VXS6 | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | Nitrate reductase [NADH] 1. | 0.776 |
TRAPUB_2991 | TRAPUB_11375 | A0A1M2VF55 | A0A1M2VWY0 | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | Sulfite oxidase. | 0.659 |
TRAPUB_2991 | TRAPUB_13616 | A0A1M2VF55 | A0A1M2VQK6 | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | DNA repair protein RAD50. | 0.630 |
TRAPUB_2991 | TRAPUB_486 | A0A1M2VF55 | A0A1M2VM27 | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. | 0.634 |
TRAPUB_2991 | TRAPUB_6933 | A0A1M2VF55 | A0A1M2V4T6 | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | ATP-dependent DNA helicase Q-like 1. | 0.668 |
TRAPUB_2991 | TRAPUB_7199 | A0A1M2VF55 | A0A1M2V410 | O-methylsterigmatocystin oxidoreductase; Belongs to the cytochrome P450 family. | Werner syndrome ATP-dependent helicase. | 0.668 |
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