Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TRAPUB_10688 | TRAPUB_2951 | A0A1M2VYY2 | A0A1M2VF82 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.512 |
TRAPUB_10688 | TRAPUB_5361 | A0A1M2VYY2 | A0A1M2V8J6 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.466 |
TRAPUB_10822 | TRAPUB_1343 | A0A1M2VY97 | A0A1M2VJF6 | ATP-dependent DNA helicase mph1. | DNA excision repair protein ERCC-1. | 0.964 |
TRAPUB_10822 | TRAPUB_2951 | A0A1M2VY97 | A0A1M2VF82 | ATP-dependent DNA helicase mph1. | Uncharacterized protein. | 0.517 |
TRAPUB_10822 | TRAPUB_2978 | A0A1M2VY97 | A0A1M2VEZ6 | ATP-dependent DNA helicase mph1. | Nuclear protein localization protein 4. | 0.949 |
TRAPUB_10822 | TRAPUB_399 | A0A1M2VY97 | A0A1M2VM78 | ATP-dependent DNA helicase mph1. | Uncharacterized protein. | 0.964 |
TRAPUB_10822 | TRAPUB_400 | A0A1M2VY97 | A0A1M2VM47 | ATP-dependent DNA helicase mph1. | Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. | 0.964 |
TRAPUB_10822 | TRAPUB_5016 | A0A1M2VY97 | A0A1M2V9R6 | ATP-dependent DNA helicase mph1. | DNA repair protein rad16. | 0.960 |
TRAPUB_10822 | TRAPUB_6122 | A0A1M2VY97 | A0A1M2V6Y9 | ATP-dependent DNA helicase mph1. | DNA ligase 4. | 0.829 |
TRAPUB_1343 | TRAPUB_10822 | A0A1M2VJF6 | A0A1M2VY97 | DNA excision repair protein ERCC-1. | ATP-dependent DNA helicase mph1. | 0.964 |
TRAPUB_1343 | TRAPUB_2951 | A0A1M2VJF6 | A0A1M2VF82 | DNA excision repair protein ERCC-1. | Uncharacterized protein. | 0.555 |
TRAPUB_1343 | TRAPUB_2978 | A0A1M2VJF6 | A0A1M2VEZ6 | DNA excision repair protein ERCC-1. | Nuclear protein localization protein 4. | 0.977 |
TRAPUB_1343 | TRAPUB_399 | A0A1M2VJF6 | A0A1M2VM78 | DNA excision repair protein ERCC-1. | Uncharacterized protein. | 0.850 |
TRAPUB_1343 | TRAPUB_400 | A0A1M2VJF6 | A0A1M2VM47 | DNA excision repair protein ERCC-1. | Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. | 0.855 |
TRAPUB_1343 | TRAPUB_5016 | A0A1M2VJF6 | A0A1M2V9R6 | DNA excision repair protein ERCC-1. | DNA repair protein rad16. | 0.999 |
TRAPUB_1343 | TRAPUB_6122 | A0A1M2VJF6 | A0A1M2V6Y9 | DNA excision repair protein ERCC-1. | DNA ligase 4. | 0.800 |
TRAPUB_2951 | TRAPUB_10688 | A0A1M2VF82 | A0A1M2VYY2 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.512 |
TRAPUB_2951 | TRAPUB_10822 | A0A1M2VF82 | A0A1M2VY97 | Uncharacterized protein. | ATP-dependent DNA helicase mph1. | 0.517 |
TRAPUB_2951 | TRAPUB_1343 | A0A1M2VF82 | A0A1M2VJF6 | Uncharacterized protein. | DNA excision repair protein ERCC-1. | 0.555 |
TRAPUB_2951 | TRAPUB_2978 | A0A1M2VF82 | A0A1M2VEZ6 | Uncharacterized protein. | Nuclear protein localization protein 4. | 0.548 |
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