STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_164228 kDa ribonucleoprotein, chloroplastic. (574 aa)    
Predicted Functional Partners:
TRAPUB_13580
Nucleolar protein 56.
   
 
 0.993
TRAPUB_9561
ATP-dependent RNA helicase DBP2-A; Belongs to the DEAD box helicase family.
   
 
 0.960
TRAPUB_11066
Protein PXR1.
   
 
 0.953
TRAPUB_10140
Pre-rRNA-processing protein ESF2.
   
   0.944
TRAPUB_14025
Centromere/microtubule-binding protein CBF5.
   
 
 0.938
TRAPUB_10153
Nucleolar protein 58.
   
 
 0.936
TRAPUB_5217
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.920
TRAPUB_2227
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
   0.906
TRAPUB_8830
25S rRNA (Cytosine-C(5))-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.904
TRAPUB_11130
Nucleolar complex protein 2.
   
 
 0.902
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.