STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_1268KNR4/SMI1-like protein. (682 aa)    
Predicted Functional Partners:
TRAPUB_9269
Uncharacterized protein.
    
 0.786
TRAPUB_10
UBA domain-containing protein 7.
    
 0.748
TRAPUB_4880
Retinoblastoma-binding protein 5-like protein.
    
 0.733
TRAPUB_1882
Set1 complex component ash2.
    
 0.733
TRAPUB_3757
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.726
TRAPUB_4940
Nucleoporin nup132.
    
 0.725
TRAPUB_7697
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.721
TRAPUB_11608
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.721
TRAPUB_14077
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.712
TRAPUB_10280
Nuclear pore complex protein Nup160.
    
 0.710
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.