STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_718Uncharacterized protein. (465 aa)    
Predicted Functional Partners:
TRAPUB_2440
Ubiquitin-40S ribosomal protein S27a.
    
 0.772
TRAPUB_9587
Ubiquitin-like domain-containing protein.
    
 0.772
TRAPUB_7839
N-acetyltransferase eso1.
    
 0.763
TRAPUB_8876
N-acetyltransferase eso1.
    
 0.763
TRAPUB_2930
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.
    
 0.708
TRAPUB_2169
DNA polymerase kappa.
    
 0.708
TRAPUB_13268
BRCT domain-containing protein.
    
 0.708
TRAPUB_4129
Polyubiquitin.
    
 0.701
TRAPUB_4130
Polyubiquitin.
    
 0.701
TRAPUB_4131
Polyubiquitin.
    
 0.701
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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