STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_101Protein saf1. (155 aa)    
Predicted Functional Partners:
TRAPUB_11517
Pre-mRNA-splicing factor CEF1.
   
  0.909
TRAPUB_2625
Protein CWC15-like protein.
   
  0.900
TRAPUB_102
Uncharacterized protein.
 
      0.899
TRAPUB_11558
Pre-mRNA-splicing factor PRP46.
    
 0.897
TRAPUB_12310
MFAP1 domain-containing protein.
   
 0.885
TRAPUB_9303
Pre-mRNA-splicing factor 38A.
   
 0.884
TRAPUB_7700
Transposon TX1 uncharacterized 149 kDa protein.
   
  0.881
TRAPUB_9581
Uncharacterized protein.
   
 0.861
TRAPUB_9580
PWI domain-containing protein.
   
 0.861
TRAPUB_1107
Transcription elongation regulator 1.
   
  0.851
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.