TRAPUB_13780 protein (Trametes pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRAPUB_13780

ER membrane protein complex subunit 1. (1016 aa)

Predicted Functional Partners:

TRAPUB_5138

0.993

TRAPUB_13332

0.990

TRAPUB_10024

0.990

TRAPUB_7367

0.972

TRAPUB_11509

0.942

TRAPUB_11616

0.941

TRAPUB_8767

0.931

TRAPUB_10429

0.651

TRAPUB_637

0.619

TRAPUB_3847

0.597

Your Current Organism:

Trametes pubescens

NCBI taxonomy Id: 154538
Other names: T. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TRAPUB_10024	TRAPUB_11509	A0A1M2W0W0	A0A1M2VWG8	ER membrane protein complex subunit 4.	Uncharacterized protein.	0.956
TRAPUB_10024	TRAPUB_11616	A0A1M2W0W0	A0A1M2VW45	ER membrane protein complex subunit 4.	DUF2012 domain-containing protein.	0.970
TRAPUB_10024	TRAPUB_13332	A0A1M2W0W0	A0A1M2VRK1	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 3.	0.994
TRAPUB_10024	TRAPUB_13780	A0A1M2W0W0	A0A1M2VQ69	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 1.	0.990
TRAPUB_10024	TRAPUB_5138	A0A1M2W0W0	A0A1M2V9F0	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 2.	0.991
TRAPUB_10024	TRAPUB_7367	A0A1M2W0W0	A0A1M2W6P9	ER membrane protein complex subunit 4.	Uncharacterized protein.	0.976
TRAPUB_10024	TRAPUB_8767	A0A1M2W0W0	A0A1M2W4C9	ER membrane protein complex subunit 4.	Dynactin subunit 4.	0.927
TRAPUB_10429	TRAPUB_13780	A0A1M2VZR1	A0A1M2VQ69	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	ER membrane protein complex subunit 1.	0.651
TRAPUB_10429	TRAPUB_637	A0A1M2VZR1	A0A1M2VLG2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	Calnexin-like protein.	0.797
TRAPUB_11509	TRAPUB_10024	A0A1M2VWG8	A0A1M2W0W0	Uncharacterized protein.	ER membrane protein complex subunit 4.	0.956
TRAPUB_11509	TRAPUB_11616	A0A1M2VWG8	A0A1M2VW45	Uncharacterized protein.	DUF2012 domain-containing protein.	0.942
TRAPUB_11509	TRAPUB_13332	A0A1M2VWG8	A0A1M2VRK1	Uncharacterized protein.	ER membrane protein complex subunit 3.	0.944
TRAPUB_11509	TRAPUB_13780	A0A1M2VWG8	A0A1M2VQ69	Uncharacterized protein.	ER membrane protein complex subunit 1.	0.942
TRAPUB_11509	TRAPUB_5138	A0A1M2VWG8	A0A1M2V9F0	Uncharacterized protein.	ER membrane protein complex subunit 2.	0.951
TRAPUB_11509	TRAPUB_7367	A0A1M2VWG8	A0A1M2W6P9	Uncharacterized protein.	Uncharacterized protein.	0.956
TRAPUB_11616	TRAPUB_10024	A0A1M2VW45	A0A1M2W0W0	DUF2012 domain-containing protein.	ER membrane protein complex subunit 4.	0.970
TRAPUB_11616	TRAPUB_11509	A0A1M2VW45	A0A1M2VWG8	DUF2012 domain-containing protein.	Uncharacterized protein.	0.942
TRAPUB_11616	TRAPUB_13332	A0A1M2VW45	A0A1M2VRK1	DUF2012 domain-containing protein.	ER membrane protein complex subunit 3.	0.955
TRAPUB_11616	TRAPUB_13780	A0A1M2VW45	A0A1M2VQ69	DUF2012 domain-containing protein.	ER membrane protein complex subunit 1.	0.941
TRAPUB_11616	TRAPUB_5138	A0A1M2VW45	A0A1M2V9F0	DUF2012 domain-containing protein.	ER membrane protein complex subunit 2.	0.943