STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_13707Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. (154 aa)    
Predicted Functional Partners:
TRAPUB_13772
PMSR domain-containing protein.
 
   
 0.941
TRAPUB_6702
Uncharacterized protein.
    
 
 0.900
TRAPUB_8592
WD_REPEATS_REGION domain-containing protein.
    
 
 0.893
TRAPUB_13123
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 
 0.866
TRAPUB_13122
Tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 
 0.866
TRAPUB_1913
Tubulin beta chain; Belongs to the tubulin family.
    
 
 0.861
TRAPUB_9099
Tubulin beta-2 chain.
    
 
 0.861
TRAPUB_3202
Myosin regulatory light chain cdc4.
    
 
 0.766
TRAPUB_2062
Calmodulin; Belongs to the calmodulin family.
    
 
 0.766
TRAPUB_1335
Uncharacterized protein.
    
 
 0.766
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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