STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_13410Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (971 aa)    
Predicted Functional Partners:
TRAPUB_12409
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
 0.999
TRAPUB_4447
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.981
TRAPUB_4478
Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.
    
 0.962
TRAPUB_12108
Methylenetetrahydrofolate dehydrogenase [NAD(+)].
  
 
 0.961
TRAPUB_2187
Uncharacterized protein.
  
 0.947
TRAPUB_12403
DAO domain-containing protein.
  
 0.947
TRAPUB_10570
DAO domain-containing protein.
  
 0.947
TRAPUB_6703
Bifunctional purine biosynthetic protein ADE1.
   
  
 0.927
TRAPUB_1243
C-1-tetrahydrofolate synthase, cytoplasmic.
  
 
 0.904
TRAPUB_10974
Homocysteine S-methyltransferase YbgG.
  
 
 0.891
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.