STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_13269APH domain-containing protein. (267 aa)    
Predicted Functional Partners:
TRAPUB_13574
BZIP domain-containing protein.
    
 0.918
TRAPUB_845
37S ribosomal protein S7, mitochondrial.
   
 
 0.811
TRAPUB_5432
50S ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family.
    
  0.809
TRAPUB_6708
37S ribosomal protein S25, mitochondrial.
   
 
 0.805
TRAPUB_9002
37S ribosomal protein S19, mitochondrial; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.804
TRAPUB_986
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.803
TRAPUB_1423
Uncharacterized protein.
   
 
 0.793
TRAPUB_228
37S ribosomal protein mrp4, mitochondrial.
   
 
 0.790
TRAPUB_9477
30S ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.786
TRAPUB_6364
50S ribosomal protein L17.
   
   0.779
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.