STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_12252SAGA complex subunit spt20. (743 aa)    
Predicted Functional Partners:
TRAPUB_1716
Transcription initiation factor TFIID subunit 12.
    
 0.997
TRAPUB_8197
SAGA-associated factor 29.
    
 0.996
TRAPUB_13185
SAGA complex subunit spt3.
    
 0.993
TRAPUB_2756
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.992
TRAPUB_10123
Transcription initiation factor TFIID subunit 9.
    
 0.992
TRAPUB_2758
Uncharacterized protein.
    
 0.991
TRAPUB_2766
SAGA-associated factor 73.
    
 0.985
TRAPUB_4546
Transcription initiation factor TFIID subunit 5.
    
 0.981
TRAPUB_10443
Chromatin-remodeling complexes subunit ngg1.
    
 0.980
TRAPUB_4321
Histone acetyltransferase GCN5.
    
 0.968
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.