STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_12204GH16 domain-containing protein. (404 aa)    
Predicted Functional Partners:
TRAPUB_2809
Splicing factor U2AF 23 kDa subunit.
   
 0.910
TRAPUB_13977
U1 small nuclear ribonucleoprotein 70 kDa.
   
 0.866
TRAPUB_11517
Pre-mRNA-splicing factor CEF1.
   
 0.865
TRAPUB_2996
Pre-mRNA-processing factor 19.
   
 0.831
TRAPUB_12729
Nuclear cap-binding protein subunit 2.
    
 0.801
TRAPUB_4197
Pre-mRNA-splicing factor srp1.
   
 0.794
TRAPUB_13312
RRM domain-containing protein.
   
 0.794
TRAPUB_11630
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.789
TRAPUB_1519
Nuclear cap-binding protein subunit 1.
   
 0.783
TRAPUB_12934
Small nuclear ribonucleoprotein F.
   
 
 0.777
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.