Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TRAPUB_10696 | TRAPUB_11192 | A0A1M2VYT2 | A0A1M2VXE4 | Phosphoenolpyruvate carboxykinase [ATP]. | Serine/threonine-protein phosphatase. | 0.467 |
TRAPUB_10696 | TRAPUB_12163 | A0A1M2VYT2 | A0A1M2VUQ3 | Phosphoenolpyruvate carboxykinase [ATP]. | Oxalate decarboxylase OxdC. | 0.793 |
TRAPUB_10696 | TRAPUB_13137 | A0A1M2VYT2 | A0A1M2VS61 | Phosphoenolpyruvate carboxykinase [ATP]. | Malate dehydrogenase. | 0.829 |
TRAPUB_10696 | TRAPUB_13676 | A0A1M2VYT2 | A0A1M2VQG0 | Phosphoenolpyruvate carboxykinase [ATP]. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.861 |
TRAPUB_10696 | TRAPUB_4326 | A0A1M2VYT2 | A0A1M2W7F0 | Phosphoenolpyruvate carboxykinase [ATP]. | Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.752 |
TRAPUB_10696 | TRAPUB_6227 | A0A1M2VYT2 | A0A1M2V6F1 | Phosphoenolpyruvate carboxykinase [ATP]. | Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.739 |
TRAPUB_10696 | TRAPUB_9320 | A0A1M2VYT2 | A0A1M2W2Y9 | Phosphoenolpyruvate carboxykinase [ATP]. | Malate dehydrogenase. | 0.829 |
TRAPUB_11192 | TRAPUB_10696 | A0A1M2VXE4 | A0A1M2VYT2 | Serine/threonine-protein phosphatase. | Phosphoenolpyruvate carboxykinase [ATP]. | 0.467 |
TRAPUB_11192 | TRAPUB_12163 | A0A1M2VXE4 | A0A1M2VUQ3 | Serine/threonine-protein phosphatase. | Oxalate decarboxylase OxdC. | 0.685 |
TRAPUB_11192 | TRAPUB_13223 | A0A1M2VXE4 | A0A1M2VRN0 | Serine/threonine-protein phosphatase. | Uncharacterized protein. | 0.455 |
TRAPUB_11192 | TRAPUB_13301 | A0A1M2VXE4 | A0A1M2VRJ4 | Serine/threonine-protein phosphatase. | Ankyrin repeat protein nuc-2. | 0.982 |
TRAPUB_12116 | TRAPUB_12163 | A0A1M2VUS8 | A0A1M2VUQ3 | Fumarate hydratase, mitochondrial. | Oxalate decarboxylase OxdC. | 0.757 |
TRAPUB_12116 | TRAPUB_13137 | A0A1M2VUS8 | A0A1M2VS61 | Fumarate hydratase, mitochondrial. | Malate dehydrogenase. | 0.947 |
TRAPUB_12116 | TRAPUB_13676 | A0A1M2VUS8 | A0A1M2VQG0 | Fumarate hydratase, mitochondrial. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.738 |
TRAPUB_12116 | TRAPUB_4326 | A0A1M2VUS8 | A0A1M2W7F0 | Fumarate hydratase, mitochondrial. | Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.786 |
TRAPUB_12116 | TRAPUB_6227 | A0A1M2VUS8 | A0A1M2V6F1 | Fumarate hydratase, mitochondrial. | Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.774 |
TRAPUB_12116 | TRAPUB_9320 | A0A1M2VUS8 | A0A1M2W2Y9 | Fumarate hydratase, mitochondrial. | Malate dehydrogenase. | 0.947 |
TRAPUB_12163 | TRAPUB_10696 | A0A1M2VUQ3 | A0A1M2VYT2 | Oxalate decarboxylase OxdC. | Phosphoenolpyruvate carboxykinase [ATP]. | 0.793 |
TRAPUB_12163 | TRAPUB_11192 | A0A1M2VUQ3 | A0A1M2VXE4 | Oxalate decarboxylase OxdC. | Serine/threonine-protein phosphatase. | 0.685 |
TRAPUB_12163 | TRAPUB_12116 | A0A1M2VUQ3 | A0A1M2VUS8 | Oxalate decarboxylase OxdC. | Fumarate hydratase, mitochondrial. | 0.757 |
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