STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_11823Retrovirus-related Pol polyprotein from transposon TNT 1-94. (644 aa)    
Predicted Functional Partners:
TRAPUB_5215
Copia protein.
 
     0.732
TRAPUB_628
Histone acetyltransferase type B subunit 2.
    
 0.681
TRAPUB_5361
Uncharacterized protein.
    
  0.557
TRAPUB_1343
DNA excision repair protein ERCC-1.
    
  0.555
TRAPUB_2978
Nuclear protein localization protein 4.
    
  0.548
TRAPUB_400
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.548
TRAPUB_6122
DNA ligase 4.
    
  0.517
TRAPUB_399
Uncharacterized protein.
    
 0.517
TRAPUB_10822
ATP-dependent DNA helicase mph1.
    
 0.517
TRAPUB_13339
Copia protein.
 
     0.516
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.