STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_11697CxC2 domain-containing protein. (1078 aa)    
Predicted Functional Partners:
TRAPUB_628
Histone acetyltransferase type B subunit 2.
    
 0.606
TRAPUB_5361
Uncharacterized protein.
    
  0.557
TRAPUB_1343
DNA excision repair protein ERCC-1.
    
  0.555
TRAPUB_2978
Nuclear protein localization protein 4.
    
  0.548
TRAPUB_1859
Uncharacterized protein.
  
 
   0.543
TRAPUB_6122
DNA ligase 4.
    
  0.517
TRAPUB_10822
ATP-dependent DNA helicase mph1.
    
 0.517
TRAPUB_1204
Uncharacterized protein.
  
 
   0.516
TRAPUB_5016
DNA repair protein rad16.
    
  0.515
TRAPUB_14253
Uncharacterized protein.
  
 
   0.515
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.