STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_11148Phytanoyl-CoA dioxygenase domain-containing protein 1. (281 aa)    
Predicted Functional Partners:
TRAPUB_2416
Peroxisomal targeting signal 2 receptor.
    
 0.898
TRAPUB_6545
Alanine--glyoxylate aminotransferase 1.
    
 0.798
TRAPUB_2723
Peroxisomal membrane protein PAS20.
     
 0.765
TRAPUB_2157
Peroxisomal targeting signal receptor.
    
 0.748
TRAPUB_13061
Peroxisomal targeting signal 1 receptor.
    
 0.748
TRAPUB_13302
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.747
TRAPUB_6386
Peroxisomal membrane protein PER10.
    
 0.714
TRAPUB_3762
Pex14_N domain-containing protein.
    
 0.714
TRAPUB_6736
3-ketoacyl-CoA thiolase B, peroxisomal; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.697
TRAPUB_6750
Uncharacterized protein.
   
 
 0.697
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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