STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_10895CCHC-type domain-containing protein. (104 aa)    
Predicted Functional Partners:
TRAPUB_9977
ATP-dependent RNA helicase mtr4.
   
 
 0.700
TRAPUB_421
Poly(A) RNA polymerase cid14.
   
 
 0.674
TRAPUB_7535
Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.
    
  0.644
TRAPUB_13683
Serine/threonine-protein kinase 32A.
    
  0.613
TRAPUB_8478
Serine/threonine-protein kinase 32C.
    
  0.613
TRAPUB_2696
54S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.
    
  0.582
TRAPUB_10522
HABP4_PAI-RBP1 domain-containing protein.
   
 
 0.499
TRAPUB_638
Uncharacterized protein.
   
 
 0.486
TRAPUB_11370
Uncharacterized protein.
   
   0.477
TRAPUB_6805
Pumilio-like domain family member 6.
   
   0.470
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.