STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_10602Rho_N domain-containing protein. (706 aa)    
Predicted Functional Partners:
TRAPUB_12623
Uncharacterized protein.
    
 0.903
TRAPUB_6702
Uncharacterized protein.
    
 0.664
TRAPUB_2923
Extracellular matrix protein FRAS1.
   
 0.629
TRAPUB_10369
26S proteasome non-ATPase regulatory subunit 14-like protein.
    
  0.577
TRAPUB_13170
WSC domain-containing protein 2.
    
 0.552
TRAPUB_2219
Transcription factor tau subunit sfc4.
    
 0.546
TRAPUB_4628
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
    
 0.546
TRAPUB_10161
Transcription factor tau subunit sfc1.
    
 0.544
TRAPUB_10122
WD_REPEATS_REGION domain-containing protein.
    
  0.541
TRAPUB_1630
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
  0.529
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.