STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_10083Uncharacterized protein. (347 aa)    
Predicted Functional Partners:
TRAPUB_12186
Elongation factor 1-beta; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.881
TRAPUB_10527
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.812
TRAPUB_8918
mRNA export factor elf1.
   
 
 0.724
TRAPUB_1496
DNA-directed RNA polymerases I and III subunit RPAC1.
   
 
 0.654
TRAPUB_11168
DNA-directed RNA polymerase II subunit RPB3.
   
 
 0.654
TRAPUB_11874
Uncharacterized protein.
    
 0.653
TRAPUB_11348
Uncharacterized protein.
    
 0.653
TRAPUB_14322
Tyrosine--tRNA ligase.
   
 0.634
TRAPUB_6018
WHEP-TRS domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.626
TRAPUB_5085
Valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.605
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.