TRAPUB_9900 protein (Trametes pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRAPUB_9900

Heat shock factor protein 4. (623 aa)

Predicted Functional Partners:

TRAPUB_12197

0.809

TRAPUB_56

0.785

TRAPUB_10891

0.785

TRAPUB_1053

0.778

TRAPUB_8713

0.777

TRAPUB_1110

0.769

TRAPUB_6856

0.764

TRAPUB_6860

0.764

TRAPUB_1257

0.764

TRAPUB_227

0.764

Your Current Organism:

Trametes pubescens

NCBI taxonomy Id: 154538
Other names: T. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TRAPUB_1053	TRAPUB_10891	A0A1M2VK95	A0A1M2VY87	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	0.560
TRAPUB_1053	TRAPUB_1110	A0A1M2VK95	A0A1M2VKC3	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Endoplasmin.	0.907
TRAPUB_1053	TRAPUB_12197	A0A1M2VK95	A0A1M2VUV5	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein 17.	0.953
TRAPUB_1053	TRAPUB_1257	A0A1M2VK95	A0A1M2VJS2	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock protein HSS1; Belongs to the heat shock protein 70 family.	0.834
TRAPUB_1053	TRAPUB_227	A0A1M2VK95	A0A1M2VMT0	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	0.835
TRAPUB_1053	TRAPUB_56	A0A1M2VK95	A0A1M2VN53	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	DNA damage checkpoint protein rad24; Belongs to the 14-3-3 family.	0.557
TRAPUB_1053	TRAPUB_6856	A0A1M2VK95	A0A1M2V4R7	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein 12B.	0.831
TRAPUB_1053	TRAPUB_6860	A0A1M2VK95	A0A1M2V511	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein 12B.	0.831
TRAPUB_1053	TRAPUB_8713	A0A1M2VK95	A0A1M2W4E6	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	78 kDa glucose-regulated protein-like protein; Belongs to the heat shock protein 70 family.	0.886
TRAPUB_1053	TRAPUB_9900	A0A1M2VK95	A0A1M2W173	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock factor protein 4.	0.778
TRAPUB_10891	TRAPUB_1053	A0A1M2VY87	A0A1M2VK95	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.560
TRAPUB_10891	TRAPUB_1110	A0A1M2VY87	A0A1M2VKC3	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Endoplasmin.	0.518
TRAPUB_10891	TRAPUB_12197	A0A1M2VY87	A0A1M2VUV5	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Heat shock 70 kDa protein 17.	0.467
TRAPUB_10891	TRAPUB_1257	A0A1M2VY87	A0A1M2VJS2	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Heat shock protein HSS1; Belongs to the heat shock protein 70 family.	0.495
TRAPUB_10891	TRAPUB_227	A0A1M2VY87	A0A1M2VMT0	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	0.495
TRAPUB_10891	TRAPUB_56	A0A1M2VY87	A0A1M2VN53	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	DNA damage checkpoint protein rad24; Belongs to the 14-3-3 family.	0.766
TRAPUB_10891	TRAPUB_6856	A0A1M2VY87	A0A1M2V4R7	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Heat shock 70 kDa protein 12B.	0.442
TRAPUB_10891	TRAPUB_6860	A0A1M2VY87	A0A1M2V511	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Heat shock 70 kDa protein 12B.	0.442
TRAPUB_10891	TRAPUB_8713	A0A1M2VY87	A0A1M2W4E6	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	78 kDa glucose-regulated protein-like protein; Belongs to the heat shock protein 70 family.	0.505
TRAPUB_10891	TRAPUB_9900	A0A1M2VY87	A0A1M2W173	14-3-3 protein-like protein; Belongs to the 14-3-3 family.	Heat shock factor protein 4.	0.785