TRAPUB_9640 protein (Trametes pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRAPUB_9640

Uncharacterized protein. (75 aa)

Predicted Functional Partners:

TRAPUB_6970

0.915

TRAPUB_12811

0.915

TRAPUB_12810

0.901

TRAPUB_2906

0.761

TRAPUB_10872

0.674

TRAPUB_9080

0.622

TRAPUB_9523

0.612

TRAPUB_3859

0.548

TRAPUB_9234

0.518

TRAPUB_13988

0.510

Your Current Organism:

Trametes pubescens

NCBI taxonomy Id: 154538
Other names: T. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TRAPUB_10872	TRAPUB_12810	A0A1M2VYE8	A0A1M2VST7	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	0.782
TRAPUB_10872	TRAPUB_12811	A0A1M2VYE8	A0A1M2VSU6	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial intermembrane space import and assembly protein 40.	0.805
TRAPUB_10872	TRAPUB_13988	A0A1M2VYE8	A0A1M2VPN8	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Cytochrome c oxidase subunit 6B.	0.611
TRAPUB_10872	TRAPUB_2906	A0A1M2VYE8	A0A1M2VF56	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Cytochrome c oxidase copper chaperone.	0.800
TRAPUB_10872	TRAPUB_3859	A0A1M2VYE8	A0A1M2VCZ4	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial genome maintenance protein MGM101.	0.576
TRAPUB_10872	TRAPUB_6970	A0A1M2VYE8	A0A1M2V4I3	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Uncharacterized protein.	0.805
TRAPUB_10872	TRAPUB_9080	A0A1M2VYE8	A0A1M2W3D2	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit TIM10.	0.986
TRAPUB_10872	TRAPUB_9523	A0A1M2VYE8	A0A1M2W227	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial intermembrane space cysteine motif-containing protein MIX17.	0.632
TRAPUB_10872	TRAPUB_9640	A0A1M2VYE8	A0A1M2W1Y7	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Uncharacterized protein.	0.674
TRAPUB_12810	TRAPUB_10872	A0A1M2VST7	A0A1M2VYE8	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	0.782
TRAPUB_12810	TRAPUB_13988	A0A1M2VST7	A0A1M2VPN8	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	Cytochrome c oxidase subunit 6B.	0.529
TRAPUB_12810	TRAPUB_2906	A0A1M2VST7	A0A1M2VF56	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	Cytochrome c oxidase copper chaperone.	0.949
TRAPUB_12810	TRAPUB_3859	A0A1M2VST7	A0A1M2VCZ4	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	Mitochondrial genome maintenance protein MGM101.	0.586
TRAPUB_12810	TRAPUB_9080	A0A1M2VST7	A0A1M2W3D2	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	Mitochondrial import inner membrane translocase subunit TIM10.	0.782
TRAPUB_12810	TRAPUB_9234	A0A1M2VST7	A0A1M2W2U4	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	COX assembly mitochondrial protein; Required for mitochondrial cytochrome c oxidase (COX) assembly and respiration; Belongs to the CMC family.	0.492
TRAPUB_12810	TRAPUB_9523	A0A1M2VST7	A0A1M2W227	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	Mitochondrial intermembrane space cysteine motif-containing protein MIX17.	0.637
TRAPUB_12810	TRAPUB_9640	A0A1M2VST7	A0A1M2W1Y7	7, 8-dihydropterin-6-methyl-4-(Beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase.	Uncharacterized protein.	0.901
TRAPUB_12811	TRAPUB_10872	A0A1M2VSU6	A0A1M2VYE8	Mitochondrial intermembrane space import and assembly protein 40.	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	0.805
TRAPUB_12811	TRAPUB_13988	A0A1M2VSU6	A0A1M2VPN8	Mitochondrial intermembrane space import and assembly protein 40.	Cytochrome c oxidase subunit 6B.	0.571
TRAPUB_12811	TRAPUB_2906	A0A1M2VSU6	A0A1M2VF56	Mitochondrial intermembrane space import and assembly protein 40.	Cytochrome c oxidase copper chaperone.	0.949