STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_9493ISWI chromatin-remodeling complex ATPase ISW2. (1120 aa)    
Predicted Functional Partners:
TRAPUB_11623
Imitation switch two complex protein 1.
    
 0.993
TRAPUB_628
Histone acetyltransferase type B subunit 2.
   
 0.980
TRAPUB_9555
PHD domain-containing protein.
    
 0.975
TRAPUB_887
Histone H2B; Belongs to the histone H2B family.
   
 0.967
TRAPUB_5207
Histone H3.
   
 0.954
TRAPUB_4817
Histone H3.2.
   
 0.954
TRAPUB_346
Histone H2A; Belongs to the histone H2A family.
   
 0.954
TRAPUB_13567
Histone H3; Belongs to the histone H3 family.
   
 0.954
TRAPUB_11039
Histone H3; Belongs to the histone H3 family.
   
 0.954
TRAPUB_4935
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.950
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.