STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_9029Uncharacterized protein. (504 aa)    
Predicted Functional Partners:
TRAPUB_2996
Pre-mRNA-processing factor 19.
    
   0.815
TRAPUB_13897
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.776
TRAPUB_4068
Sorting nexin lst-4.
    
 0.692
TRAPUB_13127
ADP-ribosylation factor; Belongs to the cytochrome P450 family.
    
 0.689
TRAPUB_12955
ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.
    
 0.689
TRAPUB_14419
Synaptojanin-2.
    
 0.686
TRAPUB_13987
72 kDa inositol polyphosphate 5-phosphatase.
    
 0.686
TRAPUB_10929
Inositol-1,4,5-trisphosphate 5-phosphatase 1.
    
 0.686
TRAPUB_2661
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
 0.684
TRAPUB_4558
SAC domain-containing protein.
    
 0.678
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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