STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_8424Uncharacterized protein. (416 aa)    
Predicted Functional Partners:
TRAPUB_13362
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.875
TRAPUB_2337
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.874
TRAPUB_4415
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.868
TRAPUB_13513
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.868
TRAPUB_12583
DNA-directed RNA polymerase II subunit rpb4.
    
 0.868
TRAPUB_11168
DNA-directed RNA polymerase II subunit RPB3.
    
 0.868
TRAPUB_10067
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
 0.868
TRAPUB_1988
DNA-directed RNA polymerase II subunit rpb7.
    
 0.867
TRAPUB_10772
DNA-directed RNA polymerases I, II, and III subunit RPABC3.
    
 0.867
TRAPUB_10289
DNA-directed RNA polymerase II subunit RPB11.
    
 0.867
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.