STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_8512BUB3-interacting and GLEBS motif-containing protein ZNF207. (417 aa)    
Predicted Functional Partners:
TRAPUB_1130
Mitotic checkpoint protein BUB3.1.
   
 
 0.950
TRAPUB_12092
U2 snRNP component prp10.
   
  
 0.697
TRAPUB_10352
Serine/arginine-rich splicing factor SR45.
   
 
 0.643
TRAPUB_6713
Splicing factor 3A subunit 2.
   
 
 0.610
TRAPUB_2909
Polyadenylation factor subunit 2.
   
 
 0.558
TRAPUB_4507
RNA-binding protein rsd1.
   
  
 0.533
TRAPUB_13977
U1 small nuclear ribonucleoprotein 70 kDa.
   
 
 0.489
TRAPUB_7123
Mitotic spindle checkpoint component mad3.
    
 
 0.476
TRAPUB_12025
Checkpoint serine/threonine-protein kinase bub1.
    
 
 0.476
TRAPUB_2554
Cleavage stimulation factor subunit 2.
   
 
 0.469
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.