STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_8288Meiotically up-regulated gene 158 protein. (868 aa)    
Predicted Functional Partners:
TRAPUB_7674
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 0.907
TRAPUB_4474
40S ribosomal protein S11-A; Belongs to the universal ribosomal protein uS17 family.
   
 0.905
TRAPUB_10507
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.903
TRAPUB_3312
40S ribosomal protein S20.
   
 0.901
TRAPUB_13288
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.901
TRAPUB_4225
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.900
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.899
TRAPUB_10247
40S ribosomal protein S29.
   
 0.896
TRAPUB_8284
40S ribosomal protein S19-A.
   
 0.891
TRAPUB_7759
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 0.877
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.