STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_8192NudC domain-containing protein 1. (616 aa)    
Predicted Functional Partners:
TRAPUB_6435
Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
   
   0.561
TRAPUB_11410
Uncharacterized protein.
    
   0.559
TRAPUB_3472
OB_NTP_bind domain-containing protein.
    
   0.529
TRAPUB_14316
Uncharacterized protein.
    
   0.529
TRAPUB_14293
Uncharacterized protein.
    
   0.529
TRAPUB_1941
Uncharacterized protein.
  
 
   0.483
TRAPUB_677
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
   0.462
TRAPUB_676
Uncharacterized protein.
   
   0.462
TRAPUB_14077
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
   
   0.452
TRAPUB_4528
Nuclear movement protein nudC.
   
 
 0.449
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
Server load: low (18%) [HD]