STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS08911.123S rRNA pseudouridine synthase. (296 aa)    
Predicted Functional Partners:
AIS08910.1
NAD kinase.
  
  
 0.831
AIS08909.1
GTP pyrophosphokinase.
       0.802
AIS09589.1
23S rRNA (guanosine-2'-O-) -methyltransferase rlmB.
 
 
 0.776
AIS09629.1
LSU ribosomal protein L13p (L13Ae).
 
   0.744
AIS09464.1
rRNA methylase.
 
 
 0.738
AIS09471.1
Ribosomal silencing factor RsfA (former Iojap).
  
 
 0.733
AIS09933.1
2-amino-3-ketobutyrate coenzyme A ligase.
  
 
 0.726
AIS10084.1
GTPase and tRNA-U34 5-formylation enzyme TrmE.
  
 
 0.722
AIS09154.1
GTP-binding protein Obg.
 
 
 0.718
AIS09433.1
LSU ribosomal protein L21p.
  
   0.710
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.