STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS08930.1ComF operon protein A, DNA transporter ATPase. (427 aa)    
Predicted Functional Partners:
AIS08931.1
ComF operon protein C.
 
  
 0.948
AIS09010.1
Late competence protein ComGA, access of DNA to ComEA.
   
  
 0.783
AIS09142.1
Late competence protein ComEC, DNA transport.
   
  
 0.752
AIS09141.1
Late competence protein ComEA, DNA receptor.
   
  
 0.744
AIS08331.1
Single-stranded DNA-binding protein.
  
  
 0.728
AIS08929.1
Protein co-occurring with transport systems.
     
 0.706
AIS09013.1
Late competence protein ComGD, access of DNA to ComEA.
   
  
 0.685
AIS09012.1
Late competence protein ComGC, access of DNA to ComEA.
  
  
 0.683
AIS08932.1
Ribosomal subunit interface protein.
     
 0.675
AIS09011.1
Late competence protein ComGB, access of DNA to ComEA.
   
  
 0.672
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.