STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS09170.1Ribosomal large subunit pseudouridine synthase B. (239 aa)    
Predicted Functional Partners:
AIS09168.1
Segregation and condensation protein A.
  
 0.964
AIS09173.1
Cytidylate kinase.
 
  
 0.962
AIS09169.1
Segregation and condensation protein B.
 
  
 0.943
AIS09175.1
GTP-binding protein EngA.
 
  
 0.875
AIS09165.1
S1 RNA binding domain.
  
    0.835
AIS09167.1
RibT protein, riboflavin biosynthesis acetyltransferase (GNAT) family.
       0.832
AIS09166.1
Tyrosine recombinase XerD.
       0.828
AIS08417.1
Exodeoxyribonuclease III.
  
    0.767
AIS09164.1
Pyruvate kinase.
       0.634
AIS10026.1
Para-aminobenzoate synthase, amidotransferase component.
      0.608
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.