STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS09186.1DNA topoisomerase I. (703 aa)    
Predicted Functional Partners:
AIS09517.1
Leucyl-tRNA synthetase.
 
 
 
 0.987
AIS08331.1
Single-stranded DNA-binding protein.
  
 
 0.978
AIS09185.1
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
   
 0.934
AIS09635.1
DNA-directed RNA polymerase alpha subunit.
   
 
 0.912
AIS09489.1
DNA polymerase I.
 
 0.903
AIS09667.1
DNA-directed RNA polymerase beta' subunit.
 
 
 0.899
AIS09187.1
tRNA:m(5)U-54 MTase gid.
 
    0.871
AIS08926.1
RecA protein.
  
 0.866
AIS09224.1
DinG family ATP-dependent helicase YoaA.
  
 0.833
AIS08837.1
ATP-dependent DNA helicase UvrD/PcrA.
  
 
 0.811
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.