STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS09235.1Signal peptidase I. (191 aa)    
Predicted Functional Partners:
AIS09912.1
Signal peptidase I.
  
  
 
0.909
AIS09184.1
Ribonuclease HII.
 
  
 0.630
AIS09232.1
tRNA and rRNA cytosine-C5-methylase.
       0.607
AIS09236.1
Hypothetical protein.
       0.588
AIS09234.1
Hypothetical protein.
       0.579
AIS09336.1
Translation elongation factor LepA.
  
 
 0.577
AIS09847.1
Translation elongation factor LepA.
  
 
 0.577
AIS09233.1
Hypothetical protein.
       0.574
AIS09395.1
Ribonuclease III.
  
  
 0.569
AIS08667.1
RNA polymerase sigma-54 factor RpoN.
  
  
 0.559
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.