STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS09571.1Ribosomal RNA small subunit methyltransferase C. (206 aa)    
Predicted Functional Partners:
AIS09570.1
tRNA-specific adenosine-34 deaminase.
       0.832
AIS09575.1
LSU ribosomal protein L7/L12 (P1/P2).
  
  
 0.668
AIS09576.1
LSU ribosomal protein L10p (P0).
  
  
 0.623
AIS09585.1
Transcription antitermination protein NusG.
  
  
 0.619
AIS09154.1
GTP-binding protein Obg.
   
  
 0.611
AIS09583.1
LSU ribosomal protein L1p (L10Ae).
  
  
 0.610
AIS09569.1
DNA polymerase III subunits gamma and tau.
     
 0.575
AIS09383.1
tRNA (Guanine37-N1) -methyltransferase.
   
  
 0.558
AIS09668.1
DNA-directed RNA polymerase beta subunit.
  
    0.555
AIS09561.1
rRNA small subunit methyltransferase I.
     
 0.544
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.