STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISF6_2162Hypothetical protein; In cytochrome oxidase biogenesis cluster. (212 aa)    
Predicted Functional Partners:
ISF6_2161
Heme A synthase; Cytochrome oxidase biogenesis protein Cox15-CtaA.
 
 
 0.973
ISF6_1996
Cytochrome c oxidase, polypeptide II.
 
 0.955
ISF6_2169
Cytochrome c oxidase, polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.954
ISF6_2163
Cytochrome oxidase biogenesis protein Surf1; Facilitates heme A insertion.
 
  
 0.949
ctaB
Heme O synthase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.906
ISF6_1773
Cytochrome c.
  
 0.882
ISF6_2164
Hypothetical protein.
 
     0.877
ISF6_2167
Cytochrome oxidase biogenesis protein Cox11-CtaG; Copper delivery to Cox1.
 
 
 0.849
ISF6_1235
Cytochrome O ubiquinol oxidase, subunit II.
  
 
 0.789
ISF6_2166
Putative transmembrane protein.
 
    0.771
Your Current Organism:
Ideonella sakaiensis
NCBI taxonomy Id: 1547922
Other names: I. sakaiensis, Ideonella sakaiensis Tanasupawat et al. 2016, Ideonella sp. 201-F6, NBRC 110686, TISTR 2288, strain 201-F6
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