STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCGlucuronate isomerase. (466 aa)    
Predicted Functional Partners:
uxaB
Mannitol dehydrogenase domain protein; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
 
 0.986
CSCA_0487
Mannitol dehydrogenase domain protein.
 
 
 0.978
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.920
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.919
uxaC-2
Glucuronate isomerase.
  
  
 
0.901
CSCA_2070
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.859
CSCA_0007
Altronate dehydratase.
 
  
 0.774
CSCA_0003
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
 
   
 0.743
CSCA_0009
PfkB domain protein.
 
   
 0.658
CSCA_0490
Oligogalacturonide transporter.
 
   
 0.561
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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