Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0036Glycosyl transferase family protein. (164 aa)    
Predicted Functional Partners:
CSCA_0035
Hypothetical protein.
 
     0.830
CSCA_0034
Hypothetical protein.
       0.714
CSCA_0033
Hypothetical protein.
  
  
 0.581
CSCA_0028
Capsular polysaccharide biosynthesis protein.
 
  
 0.561
CSCA_0032
Group 1 glycosyl transferase.
  
  
 0.524
CSCA_0037
Hypothetical protein.
       0.487
CSCA_0031
Glycosyl transferase, group 1 family protein.
  
  
 0.473
CSCA_0025
Capsular polysaccharide biosynthsis protein.
  
  
 0.464
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
  
 0.454
CSCA_4780
Polysaccharide biosynthesis protein CapD.
 
  
 0.451
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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