Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0039Hypothetical protein. (412 aa)    
Predicted Functional Partners:
CSCA_0041
Hypothetical protein.
 
     0.860
CSCA_0040
Hypothetical protein.
 
     0.856
CSCA_0044
Hypothetical protein.
 
     0.803
CSCA_0045
Putative ABC transporter.
 
     0.732
CSCA_0042
Asparagine synthase (glutamine-hydrolyzing).
 
     0.697
murJ
Hypothetical protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.620
CSCA_1474
Phosphoesterase HXTX.
  
     0.504
CSCA_0028
Capsular polysaccharide biosynthesis protein.
 
     0.463
CSCA_0037
Hypothetical protein.
       0.432
CSCA_0043
Hypothetical protein.
       0.425
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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