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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0067Hypothetical protein. (120 aa)    
Predicted Functional Partners:
CSCA_0161
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
 
 0.924
CSCA_0766
Beta-lactamase domain protein.
 
  
  0.920
CSCA_2171
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 
0.915
CSCA_0701
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
 0.910
CSCA_0059
2,5-didehydrogluconate reductase.
     
 0.905
CSCA_4869
Beta-lactamase domain protein.
    
  0.901
CSCA_0375
L-serine dehydratase, iron-sulfur-dependent, alpha subunit.
     
  0.800
CSCA_0805
Amine oxidase.
     
  0.800
CSCA_1209
Threonine dehydratase.
     
  0.800
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.800
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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