STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0102Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family. (354 aa)    
Predicted Functional Partners:
CSCA_3254
Cobalamin B12-binding domain protein.
  
 0.798
CSCA_3252
Ferredoxin-containing protein.
 
  
 0.788
CSCA_3256
Uroporphyrinogen decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family.
 
  
 0.786
CSCA_1503
Methionine synthase B12-binding module cap domain protein.
  
 0.766
CSCA_5047
Ferredoxin.
 
  
 0.726
CSCA_0103
Hypothetical protein.
       0.682
CSCA_0296
Ferredoxin.
 
  
 0.679
CSCA_5049
Cobalamin B12-binding domain protein.
 
  
 0.588
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
 
 0.561
CSCA_4803
Class II glutamine amidotransferase.
     
 0.546
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.