Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0111Hypothetical protein. (743 aa)    
Predicted Functional Partners:
CSCA_0112
ABC transporter related protein.
 
 
 
 0.883
CSCA_0110
Hypothetical protein.
     
 0.833
CSCA_4467
NADH:flavin oxidoreductase/NADH oxidase.
 
 
 0.604
CSCA_1577
NADH dehydrogenase (ubiquinone) 30 kDa subunit.
    
   0.603
CSCA_0756
NADH:flavin oxidoreductase/NADH oxidase.
 
 
 0.593
CSCA_1304
TPR repeat-containing protein.
  
 
 0.541
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
 
 0.527
CSCA_2319
Small GTP-binding protein.
  
 
 0.518
CSCA_4251
Translation elongation factor G.
   
 
 0.505
fusA
Translation elongation factor G Ef-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/E [...]
   
 
 0.505
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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