Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0125D-ornithine aminomutase. (454 aa)    
Predicted Functional Partners:
CSCA_0123
Hypothetical protein.
 
     0.937
CSCA_0124
D-ornithine 4,5-aminomutase E subunit.
 
     0.937
CSCA_0122
Pyridoxal-5'-phosphate-dependent protein beta subunit.
 
     0.931
CSCA_0126
Putative cytoplasmic protein.
 
     0.919
CSCA_0127
Hypothetical protein.
 
     0.915
CSCA_0121
Hypothetical protein.
 
     0.909
CSCA_2056
Tubulin/FtsZ domain protein.
  
 
 0.815
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.815
CSCA_3950
Cyanophycin synthetase; Belongs to the MurCDEF family.
  
  
 0.805
CSCA_3114
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.768
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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