Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_0126Putative cytoplasmic protein. (363 aa)    
Predicted Functional Partners:
CSCA_0123
Hypothetical protein.
 
  
  0.990
CSCA_0124
D-ornithine 4,5-aminomutase E subunit.
 
  
 0.990
CSCA_0125
D-ornithine aminomutase.
 
     0.919
CSCA_0127
Hypothetical protein.
 
   
 0.915
CSCA_0122
Pyridoxal-5'-phosphate-dependent protein beta subunit.
 
   
 0.905
CSCA_1166
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
     
  0.900
CSCA_0121
Hypothetical protein.
 
   
 0.886
CSCA_0866
Formate C-acetyltransferase.
     
  0.800
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.800
proC-2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.800
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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