Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0129Membrane protein of unknown function. (124 aa)    
Predicted Functional Partners:
CSCA_5248
Hypothetical protein.
  
  
 0.806
CSCA_4395
Putative transcriptional regulator, CopG family.
  
     0.713
CSCA_4751
Putative sporulation protein YtxC.
  
    0.687
CSCA_0782
Hypothetical protein.
 
     0.598
CSCA_2938
Hypothetical protein.
  
     0.553
CSCA_4136
Hypothetical protein.
  
     0.532
CSCA_2882
Protein of unknown function DUF1292; Belongs to the UPF0473 family.
  
     0.524
CSCA_1715
Transcriptional regulator, AsnC family.
   
    0.502
CSCA_3103
Transcriptional regulator, TraR/DksA family.
  
     0.482
CSCA_4070
Hypothetical protein.
  
     0.464
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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