STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0171Hypothetical protein. (405 aa)    
Predicted Functional Partners:
CSCA_1518
Restriction enzyme family protein.
  
  
 0.744
CSCA_0331
Hypothetical protein.
  
    0.638
CSCA_3990
Hypothetical protein.
  
    0.638
CSCA_3096
Fibronectin-binding A domain protein.
  
    0.635
CSCA_2052
Transposase IS4 family protein.
 
     0.625
CSCA_2434
Transposase IS4 family protein.
 
     0.625
CSCA_4370
Transposase IS4 family protein.
 
     0.625
CSCA_2088
Hypothetical protein.
  
     0.582
CSCA_4363
Hypothetical protein.
  
     0.551
CSCA_3347
Type I restriction enzyme, specificity subunit.
  
    0.510
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.