Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_0193Transcriptional regulator, AraC family. (686 aa)    
Predicted Functional Partners:
CSCA_0192
MATE efflux family protein.
 
   
 0.651
CSCA_0789
DNA binding domain-containing protein.
  
     0.621
CSCA_2419
Hypothetical protein.
  
     0.603
CSCA_3396
Putative ABC transporter, permease protein.
  
 
   0.575
CSCA_0194
Short-chain dehydrogenase/reductase SDR.
     
 0.514
CSCA_4460
GNAT family acetyltransferase.
  
     0.490
CSCA_0419
Putative transcription regulator, AraC family.
 
   0.437
CSCA_3746
Hypothetical protein.
  
    0.433
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.420
CSCA_1935
Transcriptional regulator.
 
  
0.407
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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