Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0197Two component transcriptional regulator, LuxR family. (220 aa)    
Predicted Functional Partners:
CSCA_0196
Histidine kinase.
 
 0.980
CSCA_3374
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.901
CSCA_3574
PAS domain S-box domain-containing protein.
  
 
 0.883
CSCA_1760
Multi-sensor hybrid histidine kinase.
 
 
 0.845
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
  
 
 0.729
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
     
 0.718
CSCA_1182
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.590
CSCA_4155
Histidine kinase.
  
 
 0.590
CSCA_0875
Diguanylate cyclase (GGDEF) domain protein.
  
  
 0.547
CSCA_0883
Putative chemotaxis protein CheY.
 
 
 
 0.533
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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