Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CSCA_0225Transcriptional regulator, TetR family. (193 aa)    
Predicted Functional Partners:
ade
Adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
 
     0.604
CSCA_0226
Regulatory protein LysR.
       0.585
CSCA_3810
Multimeric flavodoxin WrbA fused to cytochrome c-like domain protein.
  
     0.516
CSCA_1099
Multimeric flavodoxin WrbA/cytochrome c-like domain-containing protein.
  
     0.493
CSCA_0223
Xanthine/uracil/vitamin C permease.
 
     0.479
CSCA_5026
Hypothetical protein.
  
     0.464
CSCA_1428
Hypothetical protein.
  
     0.463
CSCA_0230
Molybdopterin dehydrogenase FAD-binding.
 
     0.449
CSCA_0228
Xanthine dehydrogenase.
 
     0.430
CSCA_0227
Selenium-dependent molybdenum hydroxylase 1.
     
 0.426
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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