Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_0226Regulatory protein LysR. (310 aa)    
Predicted Functional Partners:
CSCA_0227
Selenium-dependent molybdenum hydroxylase 1.
 
  
 0.896
CSCA_3243
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
  
 0.822
CSCA_1544
Protein of unknown function DUF182.
 
  
 0.788
CSCA_3236
Protein of unknown function DUF182.
 
  
 0.783
CSCA_1001
Protein of unknown function DUF182.
 
  
 0.762
CSCA_0230
Molybdopterin dehydrogenase FAD-binding.
 
  
 0.751
CSCA_0229
(2Fe-2S)-binding domain protein.
 
  
 0.688
CSCA_0228
Xanthine dehydrogenase.
 
   
 0.667
CSCA_0225
Transcriptional regulator, TetR family.
       0.585
CSCA_0311
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
   
 0.569
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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