STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0234Selenate reductase YgfK. (1005 aa)    
Predicted Functional Partners:
CSCA_4803
Class II glutamine amidotransferase.
 
 
 0.999
CSCA_0235
Selenium metabolism protein SsnA.
 
  
 0.959
CSCA_0233
Carbamoyltransferase YgeW; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.955
CSCA_0236
M20/DapE family protein YgeY.
 
 
 0.947
CSCA_0238
D-hydantoinase.
 
 
 0.929
CSCA_1740
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 
0.925
CSCA_2015
Thioredoxin reductase.
  
 
 0.925
CSCA_2032
Thioredoxin reductase.
  
 
 0.925
CSCA_3840
Thioredoxin reductase.
  
 
 0.925
CSCA_4342
Thioredoxin-disulfide reductase.
  
 
 0.925
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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